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… Rauer Islands. Additionally, they compared metagenome data generated from samples collected at four Rauer lakes to … level genomic variation. The genome and metagenome data are available through JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) platform. These data allowed researchers to define a haloarchaea …

… the microbes that play roles in the methane cycle. Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the … metagenome assembly, and even an introduction to data analysis using the  IMG/M system . A Comprehensive …

… , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome … being monitored and the team plans to continue collecting data to understand the ERD process.  … View the Dataset on IMG/M data portal … Datasets …

… sequenced without pooling, which yields ~ 180 Gb of data per library. Q: How much DNA/coverage is required for … Methylation detection currently only works using subread data, PacBio is working on support to use CCS data as input. Data analysis Q:  What types of analysis …

… a vast range of organisms and ecosystems. These kinds of data could open opportunities along multiple avenues, … community with advanced genomic capabilities, large scale data, and professional expertise while responsibly managing … toward exciting new directions in science, technology and data science for the JGI,” noted JGI Deputy for Science Axel …

… the study of giant viruses.  Kyrpides and the JGI’s IMG/M Data Portal were instrumental to  a study that looked into how soil viruses , and in particular a chitosanase protein, can contribute to soil health. He also contributed to an update of  the JGI’s Genome OnLine Database (GOLD ) database that also marked the platform’s …

… bean (Phaseolus vulgaris) is actually a vital source of protein in many food-insecure countries around the globe, as … nutritional value, providing anywhere from 10-30% of daily protein requirements. It is also an essential source of iron … Plant Datasets …

… viruses (NCLDV) supergroup. As a result, the giant virus protein space grew from 123,000 to over 900,000 proteins, and virus diversity in this group expanded …

… an insertion site for the E. coli cyclic di-GMP binding protein, Ec YcgR, within the Nano-lantern scaffold. They then mined sequence databases for homologous YcgR proteins and chose a set of 92 proteins for functional …

… sequence. At the time, the vital global source of both protein and oil was also the largest plant project completed … and that’s going really well. And having the sequence data available for us to enable that research will have a … Plant Datasets … Fungal Datasets …

… an A, C, T or G in a genome sequence can lead to changes in protein structures and functions, but the DNA bases …