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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … standards, and development of high-throughput untargeted analysis pipelines.  Beyond profiling over 10k …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of … user facilities—the  Environmental Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their … . To see how gene expression changes when living together versus apart, the team grew the fungus and alga, … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … size of most fern genomes. A team of researchers put together a chromosomal genome assembly and associated …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis … editing and cancer genetics. Dr. Blow carried out postdoctoral work at LBNL, where he worked on computational and experimental approaches to study genome …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The … United States. They also provided multiple access points to the information. The team harnessed a community-science … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … bacterial group in the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he …
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Streamlining Regulon Identification in Bacteria
… technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on …
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I-Min (Amy) Chen
Ph.D. in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and … one of the co-authors and key developers of the Object-Protocol Model (OPM) data management tools for scientific … currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management infrastructure of …
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Busting the Unbreakable Lignin
… components   The Science There are three main ingredients to tackle when it comes to breaking down a plant for energy: … at making use of those other two components, which requires getting through the lignin.  Researchers led by Michelle … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential …
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