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… a driving force behind the development of numerous genomic resources that fostered the widespread adoption of … research is focused on developing plant functional genomic resources (e.g. sequenced mutant collections, transformation … epigenetic analysis techniques) and utilizing these resources to understand genome organization and regulation, …

… to link experimental evidence across species. Centralized databases with large-scale transcriptome projects such as … is an updateable resource. To demonstrate that, we included datasets from two species, one of which is sweet sorghum Rio … seven more groups joined the project to contribute to the data for six new species. I must mention that some of the …

… the study of giant viruses.  Kyrpides and the JGI’s IMG/M Data Portal were instrumental to  a study that looked into … also contributed to an update of  the JGI’s Genome OnLine Database (GOLD ) database that also marked the platform’s … crop, as well as the discussion of key cassava genomic resources. Genome annotations for cassava are available on …

… with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides access to the wealth of public microbiome sequence data and enables the user to analyze these data with …

… University of Georgia provided sequencing and computational resources, respectively. This work was supported by the …

… to make sure the goals, experimental design, and plan for data utilization are clear. Contact JGI staff for feedback … a proposal. Describe in detail what you will do with the data! Ideally, you or someone on your team will have … exploring how KBase (www.kbase.us) can support biological data analysis. It is a free, open source analytics platform …

… their perspectives and views” helped her further develop management and supporting skills for the students. Being …

… Metagenomic datasets could help map out microbial diversity hotspots … biodiversity. Using publicly available genome sequence data generated over the past three decades, their study … the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite all the genomes …

… the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) … of Science User Facility, for publicly available metagenome data provided by the other study co-authors, and … datasets from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis …

… in STEM. Everyone is so happy to know you and provide all resources to excel in your project.”     Vicente Ramirez, UC … helpfulness and patience of my JGI PIs, having lots of data to play around with.” …

… focus on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for … analysis, as well as mining and visualization of big data. …

… a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a … of phage-bacterial coevolution and are also useful tools in CRISPR-Cas applications, but we are limited in our … and also those associated with humans.” The work also used resources of the  National Energy Research Scientific …