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Exploring Polymorphisms Created by Transposable Elements
… My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable …
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Six join FICUS program in 2026
… The JGI is excited to welcome six to the Facilities Integrating … (FICUS) program for fiscal year 2026, in partnership with the Environmental Molecular Sciences Laboratory (EMSL) …
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A Model System for Perennial Grasses
… ( Panicum virgatum ) is a candidate bioenergy feedstock with a complex genome with multiple copies of its chromosomes. Switchgrass has … including researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, report the …
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A Natural Mechanism Can Turbocharge Viral Evolution
… a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using proteins on … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at … at the JGI, thinks that if you’re a virus or a microbe with a DGR, you gamble every time you mutate. But, perhaps, …
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Evolution of a Fungal Gene Expression Regulator
… considered for bioenergy feedstock development. Summary With the aim of producing at least one reference genome for … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like … Robert Schmitz at the University of Georgia and including JGI researchers conducted the largest analysis to date of …
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At the Forefront of Terrestrial Virus Research
… Matthew Sullivan. He shared a few thoughts on his summer at JGI through a program that provides graduate thesis research …
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Better Genome Editing for Bioenergy
… at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica … of researchers sought to disrupt every gene in the genome with CRISPR-Cas9 in order to interrogate each one’s … to fix a defect in the approach: CRISPR-Cas9 relies on RNA with a short guiding sequence (20 bp) that directs the …
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How Microbes Can Protect Plants in Drier Straits
… New Investigator proposal was recently approved through the JGI Community Science Program, to use microbiome science to …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like …
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How Filamentous Fungi Sense Food
… a job site for a task that requires a flathead screwdriver with a full toolbox including Phillips and specialty … to mention Allen wrenches. The fungi are similarly armed with a variety of PCWDEs to first break down the components … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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From Competition to Cooperation
… independently evolved to establish symbiotic relationships with plants (mycorrhizae), and particularly how fungi that … species include 29 newly-sequenced mycorrhizal genomes. With so many fungal  genomes , the team conducted a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal … found inside mitochondria, the energy-producing structures within cells. This is the largest dataset of its kind ever … than 6,000 mitochondrial sequences previously unrecognized within existing public databases and recovered more than …
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