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… focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to the Human Genome Project, he began … basal metazoans and plants. Working with a talented team of scientists and software engineers, Dr. Goodstein …

… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … analysis led to the identification of 328 “high quality” (based on completeness) diverse new virophage genomes … the possible virophage genome size range from 13.8-29.3 kilobases (Kb) to 10.9-42.3 Kb. Additionally, the gene counts …

… and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … how competencies can be built. We recommend exploring how KBase (www.kbase.us) can support biological data analysis. It is a free, …

… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint … was the feedback from the graduate student interns; “it changed what I want to do with my life,” “I can code.”  … JGI Director Eddy Rubin. “That one meeting honestly kind of changed a lot of things because I had never known what a …

Marcel is in charge of several production pipelines (gene calling, functional … He also works on automating intra-department data exchange and assists with large scale computations on R&D …

In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … challenges. Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and Lawrence …

… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … Reddy TBK, Mukherjee S et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of … K, Mukherjee S, Reddy TBK, Chen I-MA et al. IMG/PR: a database of plasmids from genomes and metagenomes with rich …

… could one day help other organisms survive hotter, drier climates. So University of Tuscia researchers Laura Selbmann and Claudia Coleine are …

Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics technologies, keen … present current and ongoing developments at the JGI and KBase toward integrative biology and hear from researchers … the JGI Community Science Program and how you can use the KBase system to accelerate your plant genomics research. …

New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … Shiitake mushrooms get their name from the same place they often source their nutrients — the shii tree, a Japanese relative of the oak. These fungi are part of the genus Lentinula, …