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Frequently Asked Questions: Proposal Submission
… go to the proposal submission page , login using your JGI account (create one here if you don’t already have an … or longer to obtain with no guarantee of approval.    JGI staff are not eligible to submit proposals, or to be listed as co-PIs or collaborators.   JGI’s standard User Agreement must be signed before work can …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … Catalog of Earth’s Microbiomes. Nature  Biotechnology . 2020 Nov 9. doi: 10.1038/s41587-020-0718-6) DAN UDWARY: Yeah, … of Earth’s Microbiomes. And what this is, is a data set of bacterial and archaeal genomes that were created – these are …
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Natural Prodcast Episode 5: Brad Moore
… Natural Products conference, which took place last January 2020 in San Diego. San Diego, of course, is the “home turf” … first genome sequence with you. Brad: That’s right,  Dan: JGI did it in fact. Brad: That was a magical project I … in a microalgae. There were four genes there. Not like a bacterial gene cluster, but they were still clustered in the …
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FICUS
… free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … All data is made publicly available in accordance with  JGI’s Data Policy . In cases where the JGI provides customized analysis, the JGI also participates …
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Workforce Development & Education Outreach
… Outreach at JGI takes many forms: We offer internship opportunities … opportunities and ultimately, an understanding of the JGI’s role in enabling complex biological and environmental … The JGI and UC Merced have had a long-standing internship partnership that started in the summer of 2014. …
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Plant Microbial Interactions Group
… cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host … function of these phage genes is the modulation of their bacterial host to colonize plant roots, as with Arabidopsis …
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Viral Genomics Group
… measurements ( Who is active when/where, and how? ). The JGI Viral Genomics group attempts to address this question … towards specific phages and/or hosts. To that end, the JGI Viral Genomics group is exploring different approaches … The JGI Viral Genomics group is leading and/or contributing to …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge … data driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal lineages that are important for … and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and …
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Natural Prodcast Episode 19: Bill Fenical
… things I want to make sure that we talk about. You have a JGI project going with us that we want to talk a little bit … hard to believe in retrospect. BILL FENICAL: Well, in 2021, absolutely hard to believe. But when you go way back, … We now have cell pellets. And we’re pulling genomic DNA out of those cell pellets. So, we’re about ready to send …
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User Advisory Committees
… the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley … stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in this Code of Conduct. … The UEC represents the JGI user community and is responsible for providing input …
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Natural Prodcast Episode 1: The Primer, Part 1
… for the US Department of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at … – problems that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic … ALISON: Hmm. It kind of – it’s kind of like I’m smelling bacterial perfume. I mean – but it’s purposeful so it’s some …
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Natural Prodcast Episode 3: The Primer, Part 3
… state of things, and what we’re hoping to accomplish at JGI in this area. If this series of podcast episodes has … in Nature and Medicine.” It’s obviously focused more on the bacterial side of the field, and it’s a little hard to find … 80s and the 90s. And so we started to be able to explore DNA sequencing and actually get to the DNA sequence – …
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