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Natural Prodcast Episode 18: A CSP Primer
… be proposing a larger project that requires the work of two or more DOE user science facilities. That’s kind of out … at JGI start with sequencing, but where else did those sequences go? Like, what are the other scientific tools we … that describe the work. In general. Scientific merit and why it’s important. The DOE mission is one of these …
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Natural Prodcast Episode 5: Brad Moore
… then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right,  Dan: JGI did it in … Sequencing Program, and they worked with us to sequence two genomes. Those were of Salinospora tropica and arenicola … working with you, Dan, on this one, and we said, “Well, why don’t we have you know, the bioinformaticians go against …
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Natural Prodcast Episode 4: Nancy Keller
… that got me into natural products to be truthful. So, well, two things. My PhD work was with a fungal pathogen called … out introns and dealing with, you know, weirdness in the sequence. You know, some clusters are not clustered…   … it so easily with fungi. So…   NANCY: Yeah, I don’t know why. For example, with that – actually there’s a good talk …
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Publication Policy
… and collaborators have the right to produce manuscripts for publication and the responsibility for leading the … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …
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Scientific Advisory Committee
JGI Director to provide a scientific and technical overview of the JGI. The SAC is chartered to render advice, guidance, … sequencing, new sequencing technologies, and related informatics; overview of the scientific programs at the JGI; … and Environmental Research (BER) program, set the final sequence allocation for this program. …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national … at Lawrence Berkeley National Laboratory. The JGI consists of around 280 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and …
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Natural Prodcast Episode 6: Marc Chevrette
… at genomes and seeing where the really hard things to sequence were, and wondering what those … what those were … functional was these secondary metabolite pathways. So why was that? What is it about secondary metabolite pathways … sending signals. But really unpacking that complicated network of chemistry and communication is what I’m really …
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FICUS
The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … utilize a broad range of the capabilities across at least two of the facilities, and generate datasets beyond what …
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User Programs
For accepted proposals, sequencing, synthesis, metabolomics … and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user … Letters of Intent and must use a variety of capabilities at two or more user facilities. Proposals must be preceded by …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome … and their hosts on ecosystems.   Environmental molecular network:   ENVnet   is a comprehensive, mass …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic information into biological function.  The emphasis is on projects leveraging …
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