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Data Policy
… embargo starting at construct or strain delivery.  Detailed sequence information and constructs are made publicly …
Learn more
Natural Prodcast Episode 23: Aaron Puri
… of their synthases so that we can start to use the DNA sequence to predict or just understand better the language … your interest in getting into natural products. DAN: Why are you here at SIMB? AARON PURI: Yeah. Thanks Jackie. … future. So, then we were using these probes to look at host pathogen interactions mostly with like enteric bacteria. And …
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Natural Prodcast Episode 19: Bill Fenical
… learned a lot so much history from this conversation about why the ocean was basically unexplored until the 70s, and … time, we found another molecule. This time it was from a fungal strain collected from sediments in the ocean. No, … forward to seeing the data when it finally gets off the sequencers. The pandemic has obviously slowed JGI down a …
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Evolution of a Fungal Gene Expression Regulator
… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures and … on the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species … that can move to another location in the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a … relationships outside of the root cells) lineages. To learn why, researchers analyzed 135 fungal genomes representing …
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JGI Advisory Committee
… the DNA Synthesis Science User Advisory Committee, the Fungal and Algal Program User Advisory Committee, the …
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Natural Prodcast Episode 20: Brian Bachmann
… And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … polyketide synthase and then P3. We still don’t know why 20 years later. JACKIE WINTER: It’s pretty amazing, … colors. I mean, where else in nature– and they’re not fungal. Where else nature can you go see colonies of …
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Programs & Platform Leads
… drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, …
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Biodesign
… capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …
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Igor Grigoriev
… the pharmaceutical industry. He holds joint appointments as Fungal and Algal Program Head at the JGI, a Senior Scientist … from protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to … focus area was inter-organismal interactions, and two fungal proposals focus on symbiotic relationships. Jessie … endophytes of soybean and how they deter two significant pathogens, the soybean cyst nematode and the soybean sudden …
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CSP Large Scale Call
… work will NOT be considered under this program. Plant pathogens will only be considered if they are of relevance …
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