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Offerings & Capabilities
The central mission of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge … through end-to-end automation, and further advancing sequence applications, single cell genomics, DNA synthesis, …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint … then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right,  Dan: JGI did it in … working with you, Dan, on this one, and we said, “Well, why don’t we have you know, the bioinformaticians go against …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that … tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any work can begin, including the …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy … about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … biological perspective, like what was this bacterium, and why did your group want to study it? Marnix Medema: You mean …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research initiatives new to the … the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals …
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JGIota: Looking Back at Sequencing for Soybeans
The soybean is a crop that could boost biofuels and fertilize fields. … So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome … been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear more about …
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal … for advice!      … The deliverables can range from raw sequence data to well-annotated assembled genomes to … listing of approved proposals can be found here. All sequence data will be accessible on the JGI Data Portal.   … …
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Frequently Asked Questions: Project Management
Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del … I request a culture/slant/DNA of an organism that has been sequenced at the JGI? … How do I check the current status of …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The … and model gene regulatory pathways used by the filamentous fungus  Neurospora crassa, and to identify and decide on the …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of … of their synthases so that we can start to use the DNA sequence to predict or just understand better the language … your interest in getting into natural products. DAN: Why are you here at SIMB? AARON PURI: Yeah. Thanks Jackie. …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of … computational analyses of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, … of horizontal gene transfer. … The SMC provides complete sequence and annotation data for secondary metabolite …
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