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Partnerships: Adopt-A-Genome
… a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation … claimed genome sequences. This opportunity, provided by the Joint Genome Institute, builds upon thousands of microbial … JGI products and services while nurturing a fresh cohort of users Reach the next generation of genome scientists and …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric genomic science user … The JGI was created in 1997 to unite the expertise and resources …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about … There were four of us as kids in the family. I was number three. And goodness, there was no way any of us were going … first genome sequence with you. Brad: That’s right,  Dan: JGI did it in fact. Brad: That was a magical project I …
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JGI Snapshot
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … journey. And so I started my PhD in Brad Moore’s group and joined his lab when he was at University of Arizona. And I … how to look at the different Frankia genomes. And we had three genomes. We did comparative analysis. We did structure …
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Natural Prodcast Episode 19: Bill Fenical
… things I want to make sure that we talk about. You have a JGI project going with us that we want to talk a little bit … grow. Plus, what people found was that nothing grew in three days. And this is the standard protocol. Hey, look, we … eight of these weird bacteria. And we proposed to the Joint Genome Institute. DAN UDWARY: Oh, that’s where we come …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about … think his energy is infectious. DAN: I’ll say up front that JGI recently started collaborating with Ben and his group to … 3 million molecules to be discovered, I don’t think – BEN: Three million for the bacteria alone! Another 30 million for …
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Environmental Genomics Group
… of hard-to-culture microorganisms. This process enables our users to explore the genetic makeup of microbial … of thousands of metagenomic datasets, to enable our users to identify patterns and trends across different … time-series from Lake Mendota. Sci Data 11 , 966 (2024). https://doi.org/10.1038/s41597-024-03826-8 Nayfach, …
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Publication Policy
… of this policy is to establish communication norms around JGI contributions, ensure that all contributors to a … of the journal in which the research is published. The JGI expects that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about … describe. [ Go here to learn more about Tiny Earth and the JGI’s role in the project by watching Amanda Hurley’s … has developed a system. It’s relatively simple. So there’s three members, there’s a Bacillus , there’s a …
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Natural Prodcast Episode 17: Cassandra Quave
… is Professor Cassandra Quave from Emory University, with joint appointments in the School of Medicine and College of … wear my prosthetic leg. I had my leg amputated when I was three and almost died of an infection following the … people aspects of things, because a lot of what we do at JGI in terms of the sequencing that we do is very …
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Data Policy
… produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our … for the remainder of this policy) produced through all user projects accepted FY22 and later through the Community … : A period in which data is not publicly available in JGI systems or outside repositories. Full access is granted …
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