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Single Cell Research Group
… genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood G. T., Teh …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… mats are wildly prevalent, containing an estimated 40 to 80 percent of all the microbial cells on Earth. As … a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … the virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the …
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Exploring Phages at JGI
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Natural Prodcast Episode 3: The Primer, Part 3
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these … such as terrestrial soil, having additional isolates and metagenomic datasets will strengthen future virus-host … of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… of stable, synthetic microbial communities to take advantage of their joint metabolisms. Because, together, microbes …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. Epub 2019 Apr … see this  Metabolomics Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile …
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A Shrubbier Version of Rubber
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Natural Prodcast Episode 2: The Primer, Part 2
… maybe obvious or notable. We are still in – not an early stage. I think we can identify most secondary metabolism … yeah. I mean, you might be producing things at different stages of growth or different signals from the environment … molecules and their discoveries over a stretch from 1940 to 2000. As you can see, from the 1940s, into the 50s …
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Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance
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2025 NeLLi Symposium
Natarajan Google Olga Zhaxybayeva Dartmouth University … Metagenomic and single-cell sequence data have provided a … Dartmouth University See full agenda at the bottom of this page. … Check back for information on venue and lodging.  … … to space restraints. Poster Sizes: The poster boards are 4’x8′. Please be mindful in bringing posters that are at …
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Plant Pan-Genomics Comes of Age
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