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An Integrated Dataset to Understand Ecosystem Interaction
… partners. The Science To help better understand how ecosystems work and how healthy they are, a recent data set  … data set will help identify how different elements of the ecosystem interact and respond to changes in the … is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by the U.S. …
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Back to the Future! A Sorghum Story
You might know sorghum as an edible grain. But there are some sorghum varieties, grown on marginal land with little water, … specifically to turn their biomass into sustainable biofuel and bioproducts. John Mullet, a biologist at Texas A&M …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … the sponges or other things. And we know lots more about microbiomes and symbionts that live with other organisms, … products because they’re easy to find. They grow in the soil. These are the same guys that produce geosmin. And so …
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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have taken a look at … fungi, bacteria and viruses survive. With this metagenomic analysis, it was possible to identify specific attributes — …
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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … cutting-edge sequencing technologies and advanced genomic analysis to explore the rich diversity of fungi and algae. … understanding of how fungi and algae contribute to ecosystems and industries. The program also explores …
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IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … high altitude! And a lot of us moved on to work in simpler systems, like bacteria, where we figure we can make more … rich and underappreciated. And we’ve worked both with the microbiome. So, with symbiotic bacteria that live in animals …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … work. And I think as we understand more about regulatory systems that will also help us predict which hosts might be … has led a vision for the JGI that sees secondary metabolism analysis and research as a driver for novel technologies …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … can turn on the natural product, say clusters or expression systems so that-- BETSY PARKINSON: Exactly. DAN: --you get … unknown. And so we've done the sequence similallity network analysis where we look for other receptors with sequence …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and … for the JGI’s 25th anniversary, the JGI mural references dozens of iconic JGI contributions to advancing the frontiers …
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Interactions between plants and soil shaping the root microbiome under abiotic stress
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our … diversity, understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity.  …
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