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Secondary Metabolites Program
… Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and … their potential applications in the bioeconomy including biofuels, biochemicals and sustainable agriculture. …
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Products
… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to …
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An Integrated Dataset to Understand Ecosystem Interaction
… partners. The Science To help better understand how ecosystems work and how healthy they are, a recent data set  … data set will help identify how different elements of the ecosystem interact and respond to changes in the … is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by the U.S. …
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User Support
… The JGI Project Management Office carries out a number of activities to facilitate … Investigator Providing a general orientation to JGI systems to Investigators Preparation of formal Statement of … has completed, your Project Manager will initiate analysis with the appropriate JGI analysis team. During this …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … the sponges or other things. And we know lots more about microbiomes and symbionts that live with other organisms, … products because they’re easy to find. They grow in the soil. These are the same guys that produce geosmin. And so …
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Fungal & Algal Program
… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the biological … into practical applications, including sustainable biofuels, biomaterials, natural products, and environmental …
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Soil virus offers insight into maintaining microorganisms
… effort, researchers have identified a protein in soil viruses that may promote soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome … The IMG suite is a community resource for comparative analysis and annotation of all publicly available genomes in …
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Back to the Future! A Sorghum Story
… You might know sorghum as an edible grain. But there are some sorghum varieties, grown on marginal land with little water, … specifically to turn their biomass into sustainable biofuel and bioproducts. John Mullet, a biologist at Texas A&M …
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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have taken a look at … fungi, bacteria and viruses survive. With this metagenomic analysis, it was possible to identify specific attributes — …
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … high altitude! And a lot of us moved on to work in simpler systems, like bacteria, where we figure we can make more … rich and underappreciated. And we’ve worked both with the microbiome. So, with symbiotic bacteria that live in animals …
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IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … can turn on the natural product, say clusters or expression systems so that-- BETSY PARKINSON: Exactly. DAN: --you get … unknown. And so we've done the sequence similallity network analysis where we look for other receptors with sequence …
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