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Natural Prodcast
… metabolism. Natural products, secondary metabolites, and specialized metabolites all refer to the chemicals that make species unique and different from one another. They are incredibly important to medicine, the environment, and human health. As the JGI …
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Institutional User Agreements
Appendix identifies the type of work or specific proposal to be covered under the Agreement. The signing official must have the legal authority to commit your institution or organization to the terms and … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Natural Prodcast Episode 15: Katherine Duncan
… but so much still to understand, and a real area of growth for the field. And then, chemistry-wise, they’re the … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … of antiSMASH can be found here . It also has versions specialized for fungal BGCs and for plants . As an open …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … product chemistry? BEN:  Yeah. So, I was trained as a plant natural product chemist. When I first started in … the production of the natural product. So that was my PhD study, and then towards the end of my PhD study, then …
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Project Management Office
Management Office carries out a number of activities to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and guide them through the process of … Pennacchio PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager …
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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella elongata … organic matter, or as an endophyte, living between a plant’s root cells. The fungus is almost always found among …
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Frequently Asked Questions: Proposal Submission
… successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New … Benefits sharing in the US National Parks USDA Animal and Plant Health Inspection Service permits US Fish and Wildlife …
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FICUS Overview
… for User Science (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate the expertise and capabilities of … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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New Lineages of Life Group
… data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … 255-255 Schulz et al. (2020) Giant virus diversity and host interactions through global metagenomics. Nature. 578 …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm plant host … boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is like an office building, its … . They looked for genes known to be involved in fungal-host interactions and identified 84 gene families that were …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of single-cell methods to access … Kyrpides N. C., Woyke T . Giant virus diversity and host interactions through global metagenomics.” Nature 578(7795): … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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