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… to do an independent study on ethnobotany of some of the plants that people were using for medicines in this very … they make chemistry! And so they – secondary metabolites, specialized metabolites, however we want to call them … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much …

… as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided … below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to the  MassIVE repository . Not all products are available …

… If you stick around for the next few months, you’re going to hear my last interview with my co-host Alison Takemura, … our eukaryotic genomes, all our eukaryotic genomes. Fungal plant, algal genomes, a lot of effort goes into generating … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …

… call represents a unique opportunity for researchers to request the capabilities and expertise of both the Joint … metabolomics and analysis will be provided for free to the PI by the Department of Energy’s funding of the JGI. … provides customized analysis, the JGI also participates in publication of results. Go here for additionial information, …

… are the VIPs. They’re feasting on the compounds that plants secrete through their roots, creating a lively zone called the rhizosphere. In this episode, biologist Jennifer Pett-Ridge of Lawrence Livermore National Laboratory has your backstage pass. …

… Appendix identifies the type of work or specific proposal to be covered under the Agreement. The signing official must have the legal authority to commit your institution or organization to the terms and … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

… critical minerals and materials, inter-organismal interactions, and predictive biology, modeling and biodesign — questions of relevance to DOE’s Biological and Environmental Research (BER) program … any aspect of these mission areas, priority will be given to projects that address the areas of special emphasis that …

… but so much still to understand, and a real area of growth for the field. And then, chemistry-wise, they’re the … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …

… metabolism. Natural products, secondary metabolites, and specialized metabolites all refer to the chemicals that make species unique and different from one another. They are incredibly important to medicine, the environment, and human health. As the JGI …

… in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … of antiSMASH can be found here . It also has versions specialized for fungal BGCs and for plants . As an open …

… and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The … microbiome processes is still limited. One key challenge is to complement diversity surveys ( Who is there? ) with … and how? ). The JGI Viral Genomics group attempts to address this question in natural soil ecosystems by …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … product chemistry? BEN:  Yeah. So, I was trained as a plant natural product chemist. When I first started in … the production of the natural product. So that was my PhD study, and then towards the end of my PhD study, then …