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Sequencing Submission Requirements for DNA Synthesis
… add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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Secondary Metabolites Program
… Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and … their potential applications in the bioeconomy including biofuels, biochemicals and sustainable agriculture. …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… applied to DNA methylation analysis as well as improving metagenome assemblies. Q&A from the Webinar: Input & … with CCS / Hi-Fi PacBio reads (i.e., reads with very low error rate), so our pipeline performs long-reads-only … but we don’t offer these at this time. Q:  How does the correction of the extended PacBio compare to doing polishing …
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Natural Prodcast Episode 22: Alison Narayan
… Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … can it actually turn over? ALISON NARAYAN: So that’s an excellent question. I think that we need enzymes with good … [project] with JGI, how many flavin monooxygenases are you sequencing, sort of along that vein, of if you have one or …
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Hybrid error correction and de novo assembly of single-molecule sequencing reads
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … So chemicals are their way of talking. You bring up an excellent point though, and I think this is an area that is a … been shown today is it's more a quorum sensing within a single species. DAN: Within a species. Genus? BETSY …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … quantities of DNA derived from individual environmental cells. The proof of principle study built off earlier … and finished genome derived from an uncultured bacterial single cell – a symbiont of the green sharpshooter. In 2012, …
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … genomics-powered tools to study this complexity, including single-cell and spatial transcriptomics barcode-based … fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … come, though, too when you start talking about going after single gene clusters. BRIAN BACHMANN: That’s right. JACKIE … mammalian systems. But it allows us to assay on a single cell level against cell lines and against primary cells …
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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … we want a chemist to study the ocean. And I didn’t find a single job advertisement. But one day, I decided to really … that the molecules out there would be toxic to cancer cells. And that started something big. Because at that time, …
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Partnerships: Myco-Ed
… Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students and professors in … resources empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, …
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CSP Large Scale Call
… and predictive biology, modeling and biodesign — questions of relevance to DOE’s Biological and Environmental Research … While applications will be accepted that address any aspect of these mission areas, priority will be given to projects … and track record of the applicant. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be …
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