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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as well … submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User … Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic insights in lignin biosynthetic …
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Natural Prodcast Episode 15: Katherine Duncan
… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … and we want to talk about molecular networking, because I really enjoyed the review that you wrote with Marnix on … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … of “big data,” and artificial Intelligent/machine learning approaches in data analysis and interpretation is creating … The research efforts of the group have concentrated in demonstrating …
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JGI Advisory Committees Code of Conduct
… Guiding Principles All staff members of the US Department of Energy (DOE) Joint … on merit of issues; Act honestly, transparently, and ethically; Act on behalf of the JGI user community rather than … Fagnan, Chief Informatics Officer Len Pennacchio, Deputy of Genomic Technologies Axel Visel, Deputy for Science Programs …
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DOE Metrics
… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal  Actual … new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – … PDF] End-of-year Goal – Develop one new computationally enabled approach to analyze complex genomic datasets. …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You … successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types supported, …
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. … that showcase our collaborations and capabilities to enable great science that will help solve energy and … Notable Stories …
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User Programs
… For accepted proposals, sequencing, synthesis, metabolomics and … Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials Status …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data generated … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. Book a session via …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new … will provide pilot data to assess feasibility of a novel approach or form the foundation for a large-scale CSP … All proposals will be externally peer-reviewed for scientific merit, DOE mission …
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Community Science Program
… The Community Science Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and metabolomics … PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate genomic …
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