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JGI Portals
Our data platforms are a key resource for the broader scientific … fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … The JGI Genome … In 2021, the JGI launched the Data Portal to eventually replace the Genome Portal. … GOLD is a web resource for …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. … that showcase our collaborations and capabilities to enable great science that will help solve energy and …
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User Programs
For accepted proposals, sequencing, synthesis, metabolomics and … Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED CLOSED ONGOING ONGOING Who Should …
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal … from any institution type and at any career stage. Generally, most users are able to work with Berkeley Lab.  … proposals are subject to JGI policies on Data Release and Publication .   Except for applicants to the CSP New …
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Community Science Program
The Community Science Program (CSP) provides the scientific community at large with … PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate genomic … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … a variety of environments. ENVnet allows us to uncover globally distributed molecules with conserved structures, …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research initiatives new … will provide pilot data to assess feasibility of a novel approach or form the foundation for a large-scale CSP … and no granting of funds. … All proposals will be externally peer-reviewed for scientific merit, DOE mission …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample … Enrichments Obtained by physical separation of a biologically relevant unit from a microbial community, such as a … based on feasibility and scientific merit.  Arizona Genomics Institute will produce HMW DNA needed for these …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data generated …
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New Lineages of Life Group
Our research is focused on the discovery and characterization of … in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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User Support
The JGI Project Management Office carries out a number of activities to … with your proposal, your Project Manager will formally close out your project. You will be notified of the … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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