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The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … and ecosystems. Identifying and analyzing primary and secondary metabolites helps uncover their roles in processes … enzymatic transformations, pathways, and how changes in metabolism can affect ecosystem functions. The Metabolomics …

… at improving our collective understanding of ecological and evolutionary parameters driving virus:host dynamics in … and computational exploration of uncultivated viral diversity, characterization of molecular mechanisms involved … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

As an Integrative Genome Science User Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon … Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA Synthesis Science Programs …

Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial … The SMC provides complete sequence and annotation data for secondary metabolite biosynthetic gene clusters (BGCs) … Resources … Mycocosm … Phycocosm … Phytozome … Secondary Metabolism Collaboratory …

The Facilities Integrating Collaborations for User Science (FICUS) call … for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2024 DOE Metrics There …

… for key plant species, enhancing our understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes advanced tools, including deep … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

Guiding Principles All staff members of the US Department of … and JGI staff with respect and consideration, valuing a diversity of views and opinions; Exercise tolerance for …

Our lab is using mass spectrometry based metabolite profiling to provide … datasets to improve our understanding of microbial metabolism. Of particular interest is understanding the …