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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … repositories until the earliest of three points:  (1) publication of the data (including, but not limited to, …
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Natural Prodcast Episode 22: Alison Narayan
Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … work with in the lab. That’s something– ancestral protein prediction, reconstruction is a whole field. There’s a lot … for inviting me to be a part of your podcast. DAN UDWARY: Absolutely. We’ll have you back. Thanks. ALISON NARAYAN: …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … And to be actually sitting across the table from you.  DAN: Absolutely. It’s been a while. Talking with me today is my … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose debris, mobilize nutrients from that …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the Biological … development. Develop an understanding of microbial and fungal metabolism necessary to design communities, new …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … of weird growths on livestock due to you know, bacterial or fungal infections. Yeah, okay. So he identified these things … point?  DAN: Yeah, I’m glad you asked. One of the earliest predictions about the use of antibiotics is that eventually, …
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Predicting the chemical space of fungal polyketides by phylogeny-based bioinformatics analysis of polyketide synthase-nonribosomal peptide synthetase and its modification enzymes
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Frequently Asked Questions: Project Management
Christa Pennacchio   … You can visit the Products & Offerings section of our website for more details, including … Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) Fungal (Mycocosm) Algal (Phycocosm) … In general, data … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 19: Bill Fenical
… for you here today. We got the opportunity to talk to one of the real legends of natural products, Professor Bill … And I would point out there was almost nothing known, absolutely nothing known, which was exciting but also … time, we found another molecule. This time it was from a fungal strain collected from sediments in the ocean. No, …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act … friends or foes. The Impact Microbial communities comprised of fungi and bacteria can thrive in plant roots. They play …
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JGI Portals
… constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality … annotation, taxonomic classification, and microbial host predictions.  … The Mycocosm web portal provides data …
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