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Informatics Advisory Committee
IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, guidance, and counsel on the effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) …
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CSP Large Scale Call
… genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based … for scientific merit, DOE mission relevance, proposed data usage by the applicant/community, and track record of … For questions about the appropriateness of projects or experimental design, please contact Tanja Woyke, Deputy for …
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IMG/M: the integrated metagenome data management and comparative analysis system
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … a biosynthetic gene cluster”. And MIBiG has all of the experimentally characterized gene clusters with all of the …
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Environmental Genomics Group
… on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US … program to collect samples from across the country to standardize the process. They noted this may be the first … Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing …
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Natural Prodcast Episode 15: Katherine Duncan
… … Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to … . It’s a fantastic community-built resource for experimental protocols, media recipes, plasmid maps, useful …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of … was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Viral Genomics Group
Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under … in environmental microbial communities. This involves both experimental and computational exploration of uncultivated … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Community Science Program
… large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to … ranked proposal list, along with a recommendation from JGI management, is then forwarded to DOE for final approval. … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of … hire, Drew Doering are doing. And the other arm is on the experimental side to look at how we can best express … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This … or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … analytes from noise, and thinking about best practices for experimental design, and which is the best instrument for a …
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