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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. … profiling transcription factor binding sites across entire genomes. This technology has been further scaled to a …
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Metabolomics Program
… Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … The Metabolomics Program is focused on understanding the critical roles of metabolites in living systems, …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … Dothideomycetes genomes were conducted as part of the 1000 Fungal Genomes Project supported by the JGI Community …
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JGI@25: Roots of a Mutualist Relationship
… energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … Nature . The mushroom has a symbiotic relationship with the poplar, a JGI Flagship Genome and the first tree to have its … (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal …
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Team Science Reveals Important Protein in Poplar
… Knockout experiments showcase potential for engineering bioenergy crops The Science Scientists at … led a team that  identified a protein , PtrbHLH011, within poplar involved in plant growth, lignin production, and … Plants for the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Natural Prodcast Episode 15: Katherine Duncan
… was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … of North America. So then I came back and I worked on an EU project, the Scottish Association for Marine Science. And … But what would you say is– what do you think is the thrust of your lab, going forward? Kate Duncan: Yeah, so I …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Breaking Bad, I guess. But no, you trained me in how to genome mine, so thank you for that. And you had to put up … not enough time and money. I mean, we have a huge marine fungal project in collaboration with Bill Fenical at … also include that as well, those identifiers which can be frustrating at times. So people submitting posters, please …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture …
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Evolution of a Fungal Gene Expression Regulator
… on the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species … genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may help the pathogens … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Genome Insider
… The Genome Insider podcast brings listeners into the science that the JGI makes possible. Each episode, …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …
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A Step Toward Controlling Soybean Rust
… The United States  is the world’s leading soybean producer , and soybeans are used to produce … The fungus  Phakopsora pachyrhizi causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left … yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio …
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