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Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact …

… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . … off today with my interview with the Director of the Joint Genome Institute and head of the Secondary Metabolites … And a little after that acquisition, I moved to another project. This time on vitamin C with a Gluconibacter .  And …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for … data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … Genomes (IMG) data management system … As part of this project, pairwise average nucleotide identities (ANI) and …

… energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … Nature . The mushroom has a symbiotic relationship with the poplar, a JGI Flagship Genome and the first tree to have its … (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal …

The mission of the Joint Genome Institute is to serve the scientific … to DOE for final approval.  Following DOE approval, project managers negotiate project specifics with PIs …

… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … other plant-associated fungi. Their analysis identified fungal gene families that help determine if these fungi act … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture …

… what we know is they’re quite selective in some way for antifungal activity. They are also, some of them, are … and helping to concentrate it. But that’s the next project.  DAN: Thanks.  ALISON: We had talked a little bit … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we …

… for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead PI … accepted JGI CSP or FICUS proposal.   Competitive projects will provide pilot data to assess feasibility of a …

Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in Berkeley, California honing their scientific skills … and confidence in their own abilities. …   Want to see past projects? Read more below         …   Internship Snapshots …

Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial …

The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range of … of these facilities could generate by itself.   Accepted projects must address or be otherwise mission-aligned, but …