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Year in Review: JGI’s 2018 Progress Report Available Now
The latest edition of the JGI Progress Report highlights notable research and scientific collaborations in 2018. The cover is an image of Mono Lake, a saline soda lake … available the annual JGI Genomics of Energy & Environment Meeting in San Francisco …
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JGI Workshop at 2025 Aquatic Sciences Meeting
Details forthcoming at ASLO 2025 Aquatic Sciences Meeting …
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Who We Are
The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of around 280 researchers and support staff in … Data Collective.        … Learn more about our work at the JGI:  …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … right, got it. And just thinking about it from I know the JGI perspective here at the Joint Genome Institute, because … of Biosynthetic Clusters , which is a subsection of the IMG data portal , which is a larger portal for microbial …
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Natural Prodcast Episode 18: A CSP Primer
… with my co-host Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the best. … here’s what we talked to Tanja Woyke about. TANJA WOYKE: –meets the DOE emission criteria. So we are funded by DOE-BER … is over, the data gets released on our portals, such as IMGM. But we also then push the data to GenBank. So the raw …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m really happy … in natural product biosynthesis. I then went on to do a postdoc with Bill Metcalf, also at the University of … But what was really interesting is when I started my lab in 2018, several papers came out right in a row all about this …
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Natural Prodcast Episode 7: Ben Shen
… think his energy is infectious. DAN: I’ll say up front that JGI recently started collaborating with Ben and his group to … Yeah, I’ve heard a lot of good things about Ben. Nice to meet you, Ben. BEN: Hey, yeah! Great, I’m very happy to talk to you. And so this is the third international meeting on natural products, but as a new, I call it …
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Institutional User Agreements
… must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be required … required paperwork to your institution. (Samples of the JGI User Agreement , JGI User Agreement for Federal Agencies …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a look back at the … microbial genetics. Drell held the role until he retired in 2018. “While I never said this out loud,” Drell said, …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, … is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the … Environmental transcript sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments …
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User Support
The JGI Project Management Office carries out a number of … execution by: Metadata verification and coordination with IMG , GOLD and others for data annotation and submission … requested information or resources to users Coordinate meetings with DOE JGI Science Program leads Solicit user …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics … biology and bioinformatics approaches in support of meeting DOE mission critical programmatic goals. … Joubert …
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