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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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User Support
… of Institutional User Agreements Coordinating with JGI scientific and technical experts Project design with … be subject to the DOE JGI’s capabilities for sequencing, synthesis and/or metabolomics. Once materials are received, … and coordinate publication with JGI scientists. Synthetic DNA constructs are also shipped at this time. Your Project …
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FICUS
… mission is appropriate. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the … or outside the scope of the call.  Letters are reviewed by scientific staff of the participating User Facilities, as … technologies available at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with …
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Frequently Asked Questions: Proposal Submission
… data to well-annotated assembled genomes to synthesized DNA constructs to metabolomics data, depending on the … advance for advice. … For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the … If your project makes it successfully through the scientific review and is selected, we will provide you with …
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Programs & Platform Leads
Metagenome, Metabolomics, Secondary Metabolites, and DNA Synthesis Science Programs and draw from the infrastructure …
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Partnerships: Adopt-A-Genome
Microbiol Resour Announc.  … Objectives … What is IMG/M … Publications … Access to the microbial genomes and …
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Partnerships: Myco-Ed
… fungal biology and genomics. Myco-Ed aims to integrate real scientific contributions/discoveries into undergraduate … the Arizona Genomics Institute where high molecular weight DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The Mycocosm portal supports the …
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Natural Prodcast Episode 12: Nadine Ziemert
Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … We know each other I think– I consider us as something like scientific cousins. So we both went to Scripps [Institution … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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Natural Prodcast Episode 23: Aaron Puri
… of their synthases so that we can start to use the DNA sequence to predict or just understand better the … Alison has done a really nice job of providing that general scientific audience whereas now I’m sitting here with two … cell, right? AARON PURI: Yeah. So we can dive into the biosynthesis of these as much as you want but they– so there’s …
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Secondary Metabolites Program
… by exploring the genetic pathways responsible for their synthesis. The Secondary Metabolites Program offers users extensive genomics, DNA synthesis and metabolomics capabilities to identify, … serves as an important line of communication to the scientific community. In each episode, hear from luminaries …
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Natural Prodcast Episode 3: The Primer, Part 3
… 80s and the 90s. And so we started to be able to explore DNA sequencing and actually get to the DNA sequence – … But some of those pathways might not be tractable to synthesis. So synthesis is still very expensive and very … really simple in terms of understanding it because it’s an assembly line. You just go down the string of beads and each …
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IMG Group
Developing state-of-the-art data processing and analysis pipelines for the interpretation of microbiome omics data … with the ultimate objective of facilitating omics-based scientific investigations. Development and maintenance of … events within existing species. Within the JGI’s production pipeline, ANI is used to ascertain the species specificity …
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