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Secondary Metabolites Program
… … Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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Streamlining Regulon Identification in Bacteria
… sequencing, they were able to identify the target genes of 11 sigma factors in Streptomyces coelicolor . The Impact As … most recent study, only 12 sigma factors and 200 genes (or 209 sigma factor-target gene pairs) had been experimentally …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on …
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Finding the Fermenters
… records of 8,350 organisms along with 4,355 genomes and 13.6 million genes. The results reveal that fermentative … National Institute of Food and Agriculture grant 2018-67015-27495, the United States Department of Agriculture … genome on KBase … Narrative for Porphyromonadaceae sp. W3.11 genome on KBase … The phenotype and genotype of …
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Busting the Unbreakable Lignin
… (MAO), Institute for Collaborative Biotechnologies grants W911NF-09–D-0001 and W911NF-19-2-0026 (MAO), US Army Research Office …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… the microbes in and on humans shape our health. A total of 16 projects have been approved, divided among the following … impacts. The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and Roux, has …
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Tanja Woyke Elected to American Academy of Microbiology
… the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for AAM Fellows is based … Woyke has led JGI’s Microbial Genomics Program since 2009 and heads the Single Cells group. She has also served as … the AAM Fellows in this cohort. Go here for the full AAM news release. Woyke is also one of the organizers for the …
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How Filamentous Fungi Sense Food
… tree of life, enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was … acknowledge the use of deletion strains generated by Grant P01 GM-068087 “Functional Analysis of a Model Filamentous … under US Department of Energy Contract DE-AC02-05CH11231, a Joint Genome Institute Community Science Program …
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Boosting Small Molecule Production in Super “Soup”
… keep processes running smoothly. As reported August 26, 2021, in Nature Communications , researchers led by Hal Alper … Genomics of Energy & Environment Meeting on September 1, 2021. Register here to hear him and others.   Byline: Massie S. …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… will help solve energy and environmental challenges. In 2009, researchers at the JGI and the Bigelow Laboratory for … single cell – a symbiont of the green sharpshooter. In 2012, single cells isolated from the microbes found in the … microbial populations in oxygen minimum zones identified SAR11 bacteria as initiators of nitrogen loss in these waters. …
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Tracing the Evolution of Shiitake Mushrooms
… atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples from the … of Energy award 0000238431 to D.H., the GENOBIOREF (BIO2017-86559-R) project of the Spanish Ministry of Science and … Science and Innovation to P.F., and the NIH award R56AI146096 to A.R. J.L.S. and A.R. were supported by the HHMI and …
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Microbiome Data Science Team
… the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of thousands of new viral genomes … of Earth’s microbiomes. Nature Biotechnol . 39(4):499-509. Danko D. et al. (2021) A global metagenomic map of urban … the human gut microbiome. Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and host …
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