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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … But anyway, here’s our conversation with one of my favorite human beings, Brad Moore. — Dan: How do I introduce you, … Not a big leap, but then we began looking at microbiomes associated with various invertebrate organisms, …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to … qSIP quantifies incorporation of isotopes from labeled nutrients into …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky … the National Institutes of Health’s (NIH)  Common Fund Human Virome Program .  Nikos Kyrpides , head of the JGI’s  Microbiome Data Science , leads one project with JGI …
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Natural Prodcast Episode 14: Nigel Mouncey
… for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took a little break, but I’m hoping that from … And a little after that acquisition, I moved to another project. This time on vitamin C with a Gluconibacter .  And … a patent came out on treatment for cognitive disorders in humans, which–  DAN: I think I do remember that. I think I …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust … which includes the Sequencing Technologies team, relies on collaborations with Science Programs and Operations teams … An assay used for profiling transcription factor binding sites across entire …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … its quality and in turn affecting environmental and human health, energy production and agriculture. Understanding the compositions of river microbiomes—who the core microbes are and what they do—can …
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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … Biology Lab : a user science group dedicated to user project design, assembly, and quality control Strain …
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Institutional User Agreements
… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of … indemnification, patent rights, rights in technical data, project reporting to the DOE, and publication requirements. … the Contracts Officer will send required paperwork to your institution. (Samples of the JGI User Agreement , JGI User …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant … The researcher then submits a proposal for consideration in the next review cycle. All proposals undergo technical …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an important one that … having an output where you could make a difference with human health and increasing our longevity and agriculture. … DAN UDWARY: Nothing to be sorry about. Yeah, no, your project was really cool. The vanadium haloperoxidases are …
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Natural Prodcast Episode 12: Nadine Ziemert
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … in collaboration with other people, lake sediments. We have microbiomes from different organisms, including the human microbiome. We just really want to look into different … This is our interview with Nadine Ziemert, from the University of …
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