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Natural Prodcast Episode 21: Elizabeth Parkinson
… merge the chemical synthesis with some of the biosynthesis, getting to get the best of both worlds because I feel like … of biosynthetic gene clusters? DAN: And I don't want to jump on your SIMB talk too-- and I don't-- actually, I … students, we obviously can't put any antibiotics or antifungals in there. So they get just a smattering. JACKIE: …
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Institutional User Agreements
… of these changes may require new signed paperwork, and getting new documents in place early will prevent disruption …
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Natural Prodcast Episode 14: Nigel Mouncey
… with a contract manufacturer to actually have them build a plant for production and fermentation and transfer that … the progress. And that’s great because that helps with getting products launched. But if you can actually take it … organisms, to looking at pathways, and to looking at the interactions of organisms and environments.  DAN: Where do …
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DNA Synthesis Program
… decomposition, CO2 fixation, redox reactions, and plant metabolite biosynthesis, synthesizing and … fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and … of fungi and community annotation. … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes …
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JGI@25: Using Team Science to Build Communities Around Data
… countries. (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community … along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is to generate … representing all major evolutionary lineages in the land plant tree of life.   As of the start of 2022, there were …
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Partnerships: Adopt-A-Genome
… to a semester of some computational analysis. So they're getting research experience "light" and... they're getting a publication at the end. " — Professor Matt … interesting going through the whole process of submitting, getting feedback , and all the rules and protocols that go …
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Igor Grigoriev
… the pharmaceutical industry. He holds joint appointments as Fungal and Algal Program Head at the DOE Joint Genome … Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, … analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program …
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Evolution of a Fungal Gene Expression Regulator
… on the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species of fungi. The Impact Interactions between plants and fungi run the gamut from mutually beneficial to …
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Natural Prodcast Episode 3: The Primer, Part 3
… for a long time by many, many bacteria – and fungi and plants. And so that’s the power and the promise of, I guess, … transcriptomics, metabolomics, and natural products in plants, fungi, and microorganisms. If you want to …
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal … evolved to establish symbiotic relationships with plants (mycorrhizae), and particularly how fungi that feed … the inner workings of plant-host and mycorrhizal-fungal interactions. … The project was funded by the U.S. …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… of years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, while fungi deliver … to look at gene expression in both plant cells and fungal cells. Using a technique called single nuclei RNA …
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Frequently Asked Questions: Project Management
Phycocosm (citation: https://doi.org/10.1093/nar/gkaa898 ) Plants: Phytozome (citation: … Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) Fungal (Mycocosm) Algal (Phycocosm) … In general, data …
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