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… of variants, or pool of variants with sample sequencing to predict the number of successful variants made depends on … change etc) and structural rearrangements, alignment files 384/454 Fungal Transcriptome RNA for expression profiling and … Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun sequencing. …

… own labs or collect field samples. Depending on the required capabilities, they then ship samples—such as DNA and RNA … involving computational work with Dr. Blaby-Haas to model, predict, and understand nanoscale processes responsible for … call available here, which includes the capabilities offered by JGI through this user proposal call. …

… cosmopolitan: more than 20,000 ascomycete species and hundreds of microalgae are able to partner to form lichens. … model global carbon and nitrogen cycling. Summary To shed light on lichen, an international team led by Daniele … and colleagues worked with Igor Grigoriev, the Fungal & Algal Program lead at the US Department of Energy (DOE) …

… internship partnership that started in the summer of 2014. …

… with other organisms, and adapting to environmental changes. The program lays the groundwork for sustainable … by environmental change, focusing on plant resilience — highlighting the vulnerabilities of monocultures and the … benefits of nitrogen-fixing nodules in legumes, which can reduce dependence on fertilizers. The study of secondary …

… that can be completed on an accelerated timeline as compared with the standard CSP projects. In addition, they must … Shining a Light: Advanced Photon Source Capabilities for FICUS … Introducing the Bio-SANS Capability highlights the science that can be done with the   Biological …

… as well as microbial and plant responses to environmental changes. With advanced mass spectrometry techniques and … understanding enzymatic transformations, pathways, and how changes in metabolism can affect ecosystem functions. The … data.  This is a web-based service returns a list of scored reaction and gene matches associated with metabolites …

… collect and catalog samples, and look for patterns in algal communities, including the algae-associated … Panel on Climate Change (IPCC) 5th Assessment Report to predict where and how fast the 14° Celsius boundary is … warm water is replacing cold water communities. And this changes everything,” said Mock. The steady march of warmer …

… right in. — DAN: So secondary metabolites. I kind of inferred through the stories I told you about geosmin, which is a … that’s used for secondary metabolism, they are copies and changes that nature has made. So secondary metabolism is … synthase kind of system, like, maybe this bacteria just makes fatty acids in a weird way. Or maybe it’s a secondary …

… Download plant, algal, fungal and microbial genomes and metagenomes — … and metatranscriptomes. It provides rich data such as inferred host taxonomy, conjugation potential, antibiotic … annotation, taxonomic classification, and microbial host predictions.  … hub that provides access to publicly available sequenced algal genomes and genome annotations generated by the JGI …

… Synthesis Science User Advisory Committee, the Fungal and Algal Program User Advisory Committee, the Informatics …

… podcast brings listeners into the science that the JGI makes possible. Each episode, host Menaka Wilhelm interviews …