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Secrets of the Needles: What Microbes do on Conifer Leaves
… recent Microbiome paper , scientists focused on the conifer needle microbiome. The phyllosphere, which is known as the … do on the leaf surface. More specifically, they found that microbial community composition and functional potential varied across …
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Natural Prodcast Episode 23: Aaron Puri
… to predict or just understand better the language of microbial cell-cell communication. And he told us about his … covalently attach through a more permanent bond with their target. And so, for example, you could think of designing … a group of genes into maybe the “easiest” organism to grow within that same genus. And so that’s what we’re trying to …
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Sequencing Technologies & Products
… Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing … with Science Programs and Operations teams to enable the JGI’s focus on expanding molecular capabilities and … JGI operates highly scaled short- and long-read sequencing pipelines. This includes advanced sample management (quality …
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Synthesis
… assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate … develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program.    Representative software … which track samples through the JGI’s Synthetic Biology pipeline as well as provide process automation support   …
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User Advisory Committees
… the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley … stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in this Code of Conduct. … community, and promotes communication and collaboration within the user community. …
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Frequently Asked Questions: Project Management
… The majority of JGI projects come from the user community. Find out about JGI’s calls for proposals , and submit your proposal online … The “User” signing the JGI User Agreement will be an authorized representative from … You can request a JGI Single Sign On account at https://signon.jgi.doe.gov . …
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Institutional User Agreements
… must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be required … requires completion of work on all approved proposals within 36 months from the approved start date. Additional …
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Natural Prodcast Episode 3: The Primer, Part 3
… exposing that extract to something that you want to try to target. So if you’re trying to find an antibiotic, then you … an activator, to go ahead and, and synthesize those genes within a model organism like E.coli , and have it produce … thrust that we’re interested in doing. So we need the community.  And one of the other great things about …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… Access to the Molecular Foundry and use of JGI capabilities is free. The JGI supports remote users. Users conduct experiments in … then ship samples—such as DNA and RNA for sequencing—to JGI. Users are responsible for covering the costs of the … them as part of the user calls. Please refer to the JGI CMM call available here, which includes the capabilities …
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Natural Prodcast Episode 2: The Primer, Part 2
… of those pathways come from bacteria that actually live within, say, the sponges or other things. And we know lots … have that goal. That’s not as much our goal here at the JGI – we are not a medicinally focused organization. And so, … to be a problem. Many of these molecules, too, hit the same target. And so there’s always a need to find new antibiotics …
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Natural Prodcast Episode 11: Marnix Medema
… Tilmann on this. But this also has become very open to the community as well, so the versions of antiSMASH that we … that had the protein domain. And then for every clade within that phylogeny it made its own Soc? Pfam model, so … IMG kind of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted … proposals are NOT eligible for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and … The JGI is inviting researchers using the U.S. Culture … breakthroughs in basic science, and is exploring microbial-based synthesis of fuels beyond ethanol. …
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