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… published. The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce … identify those who contributed significantly.    Authorship Guidelines JGI will provide all users with a list of JGI …

… interactions occurring in microbiomes, these omics data must be complemented with single-cell resolution assays … to the development and maintenance of a number of viromics tools and resources. The main focus of these resource … phage proteins user-friendly integrated pipelines (MVP) and databases (IMG/VR) for viromics analyses …

… or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the … we’re now very much – we’re interested in how we can build tools which will let us see the whole landscape of natural … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National Lab. You …

… eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, … to extract insights from large-scale biological datasets: Our group develops and applies artificial … learning approaches to analyze large-scale biological datasets. This work helps uncover patterns and relationships …

… now, just because of the ways that we can generate data. So, obviously, it’s very apparent to us here at the … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted … of Energy Joint Genome Institute, a DOE office of science user facility located at Lawrence Berkeley National Lab. You …

… Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the … of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly …

… that the Joint Genome Institute is a “Department of Energy user science facility”, and so today what you’re going to … did those sequences go? Like, what are the other scientific tools we offer people? TANJA WOYKE: Yeah. Also a really good … algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the …

… by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and … characterization methods, in addition to bioinformatics tools to elucidate phage function in this tripartite … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …

… Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology … (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close partnerships with other user facilities enable the ability to leverage their …

… DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the complex, high-dimensional data (the 136 tetranucleotide frequencies for each of the …

… of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National … Systems Biology Knowledgebase and the National Microbiome Data Collective.    … other relevant organisms. We provide access to large-scale datasets and analysis tools for genomes, metagenomes, and …

… CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, … and Golden Gate methods SynTrack and associated tools, which track samples through the JGI’s Synthetic …