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Secondary Metabolites Program
… and their roles in the environment, can unlock new avenues for bio-based products and bioenergy crop … cell- and cell free-based expression platforms, tools and data for deciphering regulatory networks, and refining … … Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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Natural Prodcast Episode 23: Aaron Puri
JGI has that really got me into that because we had these new genomes that JGI had sequenced that were of these … thing I’ve learned is that when JGI gives you a ton of data you better have someone really smart to be able to … about having a lot of data. It’s a lot of metabolomics data sets. So what have we learned? So one thing that we’ve …
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FICUS
… across at least two of the facilities, and generate datasets beyond what each of these facilities could generate by … being lack of relevance to DOE mission areas.  Initiate a new LOI by logging into the   EMSL User Portal  and clicking …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … complete or near-complete viral genomes across both datasets, separating these from the vast majority of other …
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JGI Portals
Our data platforms are a key resource for the broader scientific … algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … The JGI … users. It is also a place where the community can upload new data for use by scientists and the public, and provide …
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FICUS-NERSC/KBASE
… of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( … researcher then submits a proposal for consideration in the next review cycle. All proposals undergo technical review by … such factors as genome size, polymorphism level, sample quality and availability, etc.   During scientific peer …
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Synthesis
… group dedicated to user project design, assembly, and quality control Strain Engineering Group : a research & development group and focused on new technologies and optimizing tools — including strain … Synthetic Biology Informatics Group : a team that develops data science tools for workflow management and novel …
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Natural Prodcast Episode 3: The Primer, Part 3
… by what’s called “find and grind”. So you would find some new source that you hadn’t explored before. Like, you know, … probably been since the last decade. We have a lot more data. Obviously, there’s been a lot of sequencing going on, … you want to collaborate, let us know!  Thanks, and see you next time! … Episode Transcript …   … This the third episode …
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User Support
To submit a proposal, users must first log in (Note: new users of the JGI will need to register and create a … Project Manager will facilitate project execution by: Metadata verification and coordination with IMG , GOLD and others for data annotation and submission …
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Natural Prodcast Episode 1: The Primer, Part 1
Secondary Metabolites Science Program here at JGI. It’s a new group formed under the director who has also got a long … so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify … at archive.jgi.doe.gov/user-programs . Thanks, and see you next time!  … Episode Transcript …   … This is the first …
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Natural Prodcast Episode 2: The Primer, Part 2
… very early history of the field. If you continue on, in the next episode you’ll hear us talk about the modern history of … were a really common source for people to try to find new medicines for a long time. But we know now that most of … has been really crucial.  DAN: Yeah, yeah. The more data you generate, the more knowledge you can generate. So …
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The JGI Data Portal: Improving User Experience
… technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from … Informatics Officer. JGI’s Portals, including Phytozome , IMG , GOLD , MycoCosm , and PhycoCosm , serve researchers … at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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