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… Sugarcane was the last major crop without a reference quality genome and now crop researchers can work … partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane … plant pathogen used to cause sugarcane crop losses of up to 50% of the expected yields. The reference genome of R570 is …

… Sequencing Program, and they worked with us to sequence two genomes. Those were of Salinospora tropica and arenicola . … JGI projects over the years starting with, you know, the CSP that we did and then leading up to today to some … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let …

… While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these viruses … filter, cluster, annotate, and bin viruses from metagenomes. mSystems 9:e00888-24. …

… In 2016, the JGI accepted a proposal from Sebastien Duplessis of the French National Institute for Agricultural Research (INRAE) to sequence a reference genome for the fungus Phakopsora pachyrhizi , a … Sainsbury Institute, by annotating not just one but three genomes for P. pachyrhizi , which are available on MycoCosm …

… And that ultimately– not in the ’40s, but really in the ’50s– led to a little more common use of scuba. And very … from the ocean. We didn’t know whether to study bacteria, fungi, archaea, the whole range of microbial life. So, we … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …

… The Community Science Program (CSP) provides the scientific community at large with access … of disciplines. Three calls fall under the umbrella of our CSP: The Large Scale call is for expansive projects that …

… natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. When your … cells and produce enough that way in really large like 7500 Liter bioreactors.  ALISON: Cool.  DAN: And then a few … at least before they were ground up into coffee – bacteria, fungi, you know everything. These are shared pathways for …

… marine organisms. Except during the time that we worked in fungi. But what do you see as the overall theme of your … metabolomics, and natural products in plants, fungi, and microorganisms. If you want to collaborate, let … organisms, including sponges, tunicates, cone snails, fungi, and bacteria. In recent years, Eric has been …

… Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. Through … said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … they also feature in many nutrient cycles. Thus, having reference  Chaetoceros genomes would provide more …

… on an accelerated timeline as compared with the standard CSP projects. In addition, they must utilize a broad range …

… for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to the 2014 Eucalyptus grandis reference genome that has been widely adopted. The new …

… notable research and scientific collaborations in 2018. The cover is an image of Mono Lake, a saline soda lake …