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Secondary Metabolites Program
… conditions, with only a small portion of the biosynthetic gene clusters (BGCs) being expressed. The program works to … uncover these hidden biochemical resources by exploring the genetic pathways responsible for their synthesis. The … … Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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Natural Prodcast Episode 18: A CSP Primer
I think for Natural Prodcast, I think the question that generally comes up that people come to me asking like is– … genome program. And I’m a scientist here. And have been for 18 years. (LAUGHS) DAN UDWARY: All right. Easy start. What … where smaller proposals may be a fit. Still not 20 many microbes. We still we work in plates, right? We’re a high …
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Abundant Atribacteria in deep marine sediment from the Adélie Basin, Antarctica
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Natural Prodcast Episode 9: Roger Linington
America brought to the UK? ROGER:  Yeah, it’s difficult to generalize, of course, but I felt overall that the British … about the topic we cared about. And that gave us about 12,000 molecules. And that was enough for us to build a … my perspective, JGI has a large database of biosynthetic gene clusters and biosynthetic gene cluster fragments, and …
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Data Policy
… of certain types of data to support their use by those generating data. The JGI Data Policy applies to research … outside repositories until the earliest of three points:  (1) publication of the data (including, but not limited to, … for which JGI has not yet received samples as of Sep 30, 2021 are subject to a 2-year embargo to maintain the …
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Special Initiatives & Programs
… offerings, capabilities and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For … and 200 polar/500 nonpolar metabolomics samples, and should generally conform to the guidelines for our  CSP Large Scale … from lignin left over after biomass processing. Great Lakes Bioenergy Research Center , led by the University of …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms … have many questions about the microbial communities deep underground, and before the pandemic, they took the JGI … National Laboratory. Letters of Intent are due March 16, 2022 to freely access resources at multiple DOE user …
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Accelerating Metagenomics Discoveries with Deep Learning
… with 86 participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or … rather than single cells or isolated strains, is easy to generate, but difficult to assemble and interpret. The … is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems engineers involved in …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, … Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater …
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New Research Sheds Light on Diversity in the Deep Sea
Microbial communities living near hydrothermal deep-sea vents hold vast potential for bioenergy.   The … conditions. They identified 511 new or recently discovered genera of bacteria and archaea. Many of the samples shared a … the US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 and …
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Unique genomic traits for cold adaptation in Naganishia vishniacii, a polyextremophile yeast isolated from Antarctica
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The Fungi That Survive In Antarctica
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