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Webinars on Offerings & Capabilities
… how to use our data portals here.  … … Shining a Light: Advanced Photon Source Capabilities for FICUS Research shows researchers how to tap into the capabilities of the Advanced Photon Source when applying to the FICUS call. …
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Natural Prodcast Episode 4: Nancy Keller
… called Cochliobulis heterostrophis . This is a very well known fungus because it produces a secondary metabolite or …   DAN: Got it.    NANCY: And this is really to complete the genomes, and I’m really thankful for this. It sort of goes … now to understand that a little bit better, with some advances in evolution and cell biology. I’m interested in …
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Natural Prodcast Episode 2: The Primer, Part 2
… it’s something that we have. There are animals that are known to be sources of secondary metabolites, like sponges … and you can see that different Frankia have different size genomes depending on what kinds of plants, and what kinds of … metabolites. And they often use primary metabolites as building blocks to produce novel molecules. And so we’ve got …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… now we really want to explore some of the ones that are unknown. And so we've done the sequence similallity network … in is actually seeing whether we could go into the genomes and predict what the natural product might actually … does a beautiful job of marrying synthetic chemistry, building these products that then you can then apply …
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Publication Policy
… and functional genomics data types as well as in advanced assembly and engineering strategies for DNA … of publications and allowing connections between all systems to maximize the impact of user research. The crucial … Genome Portal Navigate to the JGI Genome Portal . Click "Advanced Search" next to the search bar. Using the "Search …
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Environmental Genomics Group
… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … strategy for stable isotope probing metagenomics . mSystems , e01280-22. 10.1128/msystems.01280-22 Clum, A. et … detection of microbial diversity . Nature Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected …
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JGI Portals
… of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …
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Natural Prodcast Episode 5: Brad Moore
Institution of Oceanography. And Brad and I, Alison, have known each other for quite a while because Brad was my … all those art history photos of the, you know, various old buildings in in Rome didn’t quite do it for me. And at the … Sequencing Program, and they worked with us to sequence two genomes. Those were of Salinospora tropica and arenicola . …
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Metabolomics
… of the role small molecules play in diverse biological systems, sheds light on nutrient cycling, and leads to the … from diverse biological and environmental samples using advanced liquid chromatography mass spectrometry (LC-MS) based methods in combination with advanced computational analysis.   Overview of metabolomics …
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Francis Martin
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… event will bring together researchers across major ecosystems and disciplines who are developing and applying … microbiome dynamics. Together, we will explore cutting-edge advancements in constructing, modeling, and applying these …
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Doubling Down on Known Protein Families
… “We’ve more than doubled the number of protein families known up until now, and identified many novel structure … through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully … environment — whether that be soil, animal hosts, marine ecosystems, etc.  “So, they must be doing something interesting …
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