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Publication Policy
… and collaborators have the right to produce manuscripts for publication and the responsibility for leading the … is expected to include all those contributing significantly to the work. The JGI has significant experience and capabilities in the analysis, annotation, …
Learn more
Natural Prodcast Episode 4: Nancy Keller
… to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … This episode is our conversation with Nancy Keller, a fantastic fungal natural products researcher from the … more interested just to see if we can use Aspergillus as a model for expressing hard to work with eukaryote [genes]. So …
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How to Submit Sequencing Samples
… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting step for many … demonstrate the importance of proper nucleic acid quantification in our Illumina and PacBio sequencing workflows …
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DNA Synthesis Program
… bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … decomposition, CO2 fixation, redox reactions, and plant metabolite biosynthesis, synthesizing and biochemically … fungi and community annotation. … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes …
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Natural Prodcast Episode 12: Nadine Ziemert
… me, she’s a genome miner and has been involved with the AntiSMASH and MIBiG projects. And I found her review in … welcome, Nadine. ALISON TAKEMURA: What is the big picture for you in your lab? NADINE ZIEMERT: Big picture, I want to … have to go through publications to get proteins, and their functions, and all that stuff. And that’s the most laborious …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I … It’s a big international community effort, and I want to say thank you, personally, to everyone involved in … we’d done by hand, in order to build a machine learning model that would look at all of the data that’s in PubMed, …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … partners. The Science To help better understand how ecosystems work and how healthy they are, a recent data set  … came from two environments: natural forests and plantations managed through human intervention. By leveraging …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… multiple viruses in Earth’s deep subsurface. They are abundant representatives of deep subsurface ecosystems. A team of … fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. … to virus infections, researchers are using Altiarchaea as a model system to study virus-host interactions. Approximately …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … resources, especially for these primer episodes, if you want to dive deeper on all this at http://naturalprodcast.com … but also those molecules that mediate a well functioning ecosystem and environment and earth. So yeah, it’s like …
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Natural Prodcast Episode 7: Ben Shen
… of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … initiative, and our collaboration with Ben is an important part of that. I’m also going to mention that Ben talks … by natural products, DAN: You guys have put together a fantastic program. So I’m looking forward to the next couple …
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JGI Portals
Our data platforms are a key resource for the broader scientific community and require constant developments to meet the ever-changing demands of our … conjugation potential, antibiotic resistance genes, and ecosystem information. … The IMG/VR database offers the …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research initiatives new to the JGI. … may be submitted at any time as brief white papers. Applicants may submit up to two proposals per year (but may be … funding of the JGI. There is no cost to the user and no granting of funds. … All proposals will be externally …
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