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Research in the Eloe-Fadrosh group focuses on using … genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of … Microbial Ecology . Trends Microbiol. 10.1016/j.tim.2019.03.003 Eloe-Fadrosh, Emiley A. et al. (2016)  Metagenomics …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … large populations of bacteria and archaea in their natural environments using single cell approaches. This … the largest publicly available collection of Uncultivated Viral Genomes, derived from genomes, metagenomes, and …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample … and cloned into a vector of choice; up to 210,000 variants can be made Pool of variant libraries; sample sequencing to … reference transcriptome), DGE, alignment files 134/134 Viral Minimal Draft Draft quality viral assembly, many …

A group led by JGI scientists have made strides in improving … r ecombinase- a ssisted  g enome  e ngineering ( CRAGE ). CRAGE enables scientists to insert large pieces of … has established a portfolio of microbial hosts that users can select to be engineered. “Piloting access to this …

Scientists have discovered that the candidate bioenergy feedstock … in North America that has been the target of extensive natural sampling and field experiments due to its potential … climate change will provide unprecedented insight into the mechanisms that perennial grasses have and will use to …

The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references dozens of … of environmental and energy genomics. Click on the images below to learn about the science depicted. The …

Researchers at the JGI develop a tool to quickly and accurately … most common forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A … IMG Virus Resource (IMG/VR) , now with more than 15 million viral genomes. It was also key to developing the first …

In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … teams at the JGI are focused on what those viruses can do. For example, understanding virus-host dynamics in … vein, characterizing CRISPR defense and anti-CRISPR mechanisms in a broader range of viral genomes would give …

Plants are complex organisms that harbor a fantastic diversity … that includes bacteria, fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they … Sai Prahabkar (UC Merced Intern) … Plant / Bacteria / Viral Interactions … Single-cell characterization of …

The JGI has a strong interest in seeing that the data produced by the … is expected to include all those contributing significantly to the work. The JGI has significant experience and capabilities in the analysis, …

JGI Mission As a U.S. Department of Energy Office of Science user … Creek, California, to consolidate activities. The significant economies of scale achieved in doing so enabled the JGI … for bioenergy and bioproduction, enhance understanding of natural environmental processes relevant to DOE, and advance …

… “Adopt a Genome” is an informal program for faculty to … of the denitrifying thermophile Geobacillus thermodenitrificans subsp. calidus DSM 22629T. M Snook, et. al.  2024 . … al., 2024 . Microbiology Resource Announcements. 13 (8), e00305-24 Draft Genome Sequence of  Mesonia hippocampi  DSM …