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Reclassification of the Clostridium clostridioforme and Clostridium sphenoides clades as Enterocloster gen. nov. and Lacrimispora gen. nov., including reclassification of 15 taxa.
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Data Ecosystem
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… dataset of its kind ever assembled. The team identified 15 core genes shared across all fungi, and found that some … gene models. The JGI workflow consistently recovered all 15 core mitochondrial genes across the dataset, whereas a … tools trained on known gene sequences — to scan over 9,000 publicly available fungal nuclear genome assemblies in …
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Silver age of GOLD introduces new features
… environmental samples with canonical names.  Since its 1997 launch, active GOLD users have spurred its growth and the … of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is …
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New and Improved: Eucalyptus Reference is Now Accessible
… comparative genomic analyses.   The Impact There are 900 species of eucalyptus. The trees are fast-growing … Brazilian tree, had a gene annotation completement level of 93.8%. The 2025 assembly has a gene annotation completement level of 99.4%.  In comparing the two assemblies, the researchers …
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Microbiome Data Science Team
… Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in the group include the sequencing and … dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… 2018-2023 five-year strategic plan, the JGI accomplished 90% completion of the two- and five-year milestones. “We … toward our near- and long-term goals.” View the JGI 2024-2029 Strategic Plan as a downloadable pdf.  …
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Events
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  … of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is … was provided by the U.S. National Science Foundation (DEB 1557042), NASA (80NNSC17KO548), and the National Natural …
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You Can Move, But You Can’t Hide
… the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million viral genomes. It was also key to developing the … of Energy Joint Genome Institute (https://ror.org/04xm1d337), and the National Energy Research Scientific … Office of Biological and Environmental Research (BER) (89233218CNA000001 to L.A.N.L., DE-AC05-00OR22725 to O.R.N.L., …
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2025 NeLLi Symposium
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… of Energy Joint Genome Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is … Award, NIH Director’s New Innovator Award (7DP2CA239145), and Burroughs Wellcome Career Award for Medical …
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