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Virus-Microbe Interactions of Mud Island Mangroves
… a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some … program , which awards graduate students the opportunity to pursue part of their thesis research at one of the … builds on that. “The purpose of this CSP is to better understand methane cycling in mangrove wetlands in south …
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Creating an Energy Market for Miscanthus
… and a bioenergy plant? Meet Miscanthus , an attractive addition to your garden and a potential fuel for the future. But, to be competitive in the market, both energy policy and Miscanthus will … upgrades. In this episode, hear from scientists working on understanding Miscanthus biology and the economic terrain to …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently … Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the … impactful analysis of microbiome data that has changed our understanding of the microbiome and the microbial sciences …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of … stable, heavy isotopes, SIP allows researchers to go beyond understanding which microbes are present in a sample, to … how soil microbes cycle nitrogen and carbon, or how freshwater ecosystems process methane and organic matter.  …
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Yasuo Yoshikuni
… This program has supported over 250 projects since it started. At the JGI, Dr. Yoshikuni also manages the … crop yield, and developing a platform for building composite materials. Before joining the JGI, Dr. Yoshikuni was co-founder and chief science officer at a clean technology …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… Earth’s climate. Most methane is produced in environments without oxygen through a process called methanogenesis. … Methanogenic microorganisms therefore play a critical role in the global carbon cycle, and are of … methane as an energy source.  Until recently, our understanding of these methanogenic microorganisms was …
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Steven Wilson
… and supporting applications that span the lifecycle of activities at JGI - proposal submission and review, project and … work order creation and management, automated sequence quality control and automation of microbial/metagenomic … portals that make data available to the public, and our institutional website.   Mr. Wilson brings a user-centered …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of … nucleotide bases of DNA sequence to the public data repositories over its now 20-plus-year history. In 2019, the … the half-dozen JGI advisory committees and its primary funders at the DOE Office of Biological and Environmental …
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JGI-KBase Panel at SACNAS
… Nov. 2: Getting Credit for Scientific Contributions of Any Size What is … establishing a professional presence through getting credit for any scientific contribution they make, whether as … a research article. Speakers will highlight opportunities for students through the Department of Energy-funded …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, Tingting Xiang and Sheree Yao. … The JGI welcomed 14 scientists selected for our 2026 Community Science Program Large Scale call. This portfolio … of plants, microbes and microbial communities, and understanding of natural environmental processes — questions …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… JGI’s 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy … store.      Since 2012, O’Malley has worked with the JGI to understand the enzymes these organisms use to bust biomass …
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JGI on the 2020 Highly Cited Researchers List
… Congratulations to the 2020 Highly Cited Researchers at the JGI! They are among those recognized … decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by citations for field … a large-scale comparison of 135 fungal sequenced genomes to understand how plants and fungi developed symbiotic …
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