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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and … at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … viral genomics resources such as analytical tools and data repositories to two projects funded through the …
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Computationally Classifying Fungal Lifestyles
… of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … fungal lifestyles of saprobes and pathogens based on the data provided. In this proof of concept test, the team …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State … Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from the …
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New Research Sheds Light on Diversity in the Deep Sea
… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, … and metabolic potential of the communities studied. The datasets are available on the JGI’s  Integrated Microbial …
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Waiting to Respire
… Communications , two research teams joined forces and data sets to describe bacterial genomes for related … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and research scientist Frederik Schulz in … Carnevali and Schulz sharing co-first authorship. Their data suggests that the shared common ancestor of all five …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. The sequences were then … Scientific Computing Center , a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory. …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… large-scale “citizen science” project to generate real-time data for modeling and predicting the spread of a plant … 500 people participated in SOD Blitz activity, and these data were subsequently used by three million others in the …
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PhycoCosm Tutorial
… interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint … (JGI), a US Department of Energy Office of Science user facility at Berkeley Lab. Presented by Igor Grigoriev, …
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Nikos Kyrpides
… focus on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for … analysis, as well as mining and visualization of big data. …
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Cultivating Symbiotic Antarctic Microbes
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, experimentally demonstrated that … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the …
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The widespread IS200/605 transposon family encodes diverse programmable RNA-guided endonucleases
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Natural Prodcast Episode 23: Aaron Puri
… thing I’ve learned is that when JGI gives you a ton of data you better have someone really smart to be able to … And so now that’s what I’m joking about having a lot of data. It’s a lot of metabolomics data sets. So what have we learned? So one thing that we’ve …
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