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Mindfully Moving JGI
JGI is in the process of shifting its operations from Walnut Creek … Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years … building at Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing machines at …
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What Happens To a Rainforest When You Dial Up Drought?
Rainforests store a big fraction of all the carbon on Earth, and soil microbes play a key role in pulling that carbon out of the atmosphere. This episode, …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research was … purpose of this CSP is to better understand methane cycling in mangrove wetlands in south Texas,” he explained. “In …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint Genome Institute …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change impact on … A team of researchers tracked the impact of a large-scale heatwave event in the ocean known as “The Blob.” The event … samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint …
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A Community Resource for Secondary Metabolite Researchers
Collaboratory encourages user engagement. The Science In addition to the core set of "primary … time of publication, it is the largest repository of BGC sequence data from over 1.3 million publicly available … agriculture. This comprehensive public repository of BGC sequences that come pre-annotated using multiple commonly …
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Frederik Schulz
Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages … and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, …
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to … 39,870 projects in FY24 We generated 871 Terabases of sequence We synthesized 9.7 Megabases of DNA We processed … online the latest short-read technology, the Illumina NovaSeq X Plus, and the latest long-read technology, the Pacific …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … development of novel computational tools to identify virus sequences, the design of new experimental approaches to link …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … Program , the JGI enables large-scale synthesis support, sequencing, integrative -omics, and data mining, empowering … applications — are evolving. “JGI is famous for its work sequencing human and environmental genomes. But we now have …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important role in the cycling of nutrients in these systems.” -Mike …
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Waiting to Respire
… development of multicellular organisms. Not all bacterial lineages harnessed aerobic respiration when the Cyanobacteria did; contemporaries Melainabacteria and Sericytochromatia, members of the same clade … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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