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A Guide to Gene‐Centric Analysis Using TreeSAPP
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Phylogenomics and genetic analysis of solvent-producing Clostridium species
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A Natural Mechanism Can Turbocharge Viral Evolution
… The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using proteins on its tail fibers to latch onto a specific … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… genes has helped pave the way for the conception of a pangenome. Recordings and recaps of all three keynote talks … Jill Banfield approached Doudna with repeated genetic sequences (already known as CRISPR) that came up in her … to something that represents all of the genes within a species. A pangenome, then, consists of those sequences …
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SPRUCE-ing Up Science
… one of the first students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, … of biology and computer science, to reveal clues about how microbial and bacteria communities influence the … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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A User-Centered Approach to Accessing JGI Data
… requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … use of our search API. They have expressed an interest in using this to find files based on file metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. …
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Supporting Global Research into Actinomycetes
… Streptomyces is more than just a funny word. The 500 species described within the group are responsible for … and the focus of a  recent paper published in  Microbial Genomics .   “Studying actinomyces, especially … Streptomyces and many other related organisms, requires using more specialized tools, skills and protocols,” …
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iPHoP: A Matchmaker for Phages and their Hosts
… of virus-host interactions opens the possibility of using phages to engineer microbial communities. One day, these phages could boost … led by scientists at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … The work conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Genomic Signatures for Sedimentary Microbial Utilization of Phytoplankton Detritus in a Fast-Flowing Estuary
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Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System
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IMG ER: a system for microbial genome annotation expert review and curation
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Reconstructing each cell's genome within complex microbial communities—dream or reality?
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