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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and … their expertise in developing and managing public viral genomics resources such as analytical tools and data … contiguous viral sequences (“contigs”) from thousands of ecologically diverse metagenomics samples. The work is …
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JGI User Executive Committee Expands
… Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the Danforth Center, Sundy Maurice of the … genetics expertise and experience as a primarily fungal genomics user, he aims to help align JGI policies with … to technical capabilities JGI offers, as well as proposal review procedures and the organization of the JGI Annual …
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Doubling Down on Known Protein Families
… researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring a dark room with a … of microbes through a novel approach to better understand microbial communities by looking at protein function … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm plant host health. The … of the key community participants and enabling future metagenomics studies.   … Genome Institute, a DOE Office of Science User Facility, and supported by the Office of Science of the U.S. DOE under …
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with … senior authors. “It offers us the possibility to explore genomically the whole complex of progenitors and descendant … of the polyploid reference line is simply not true based on previous pan-genome studies. Thus, we must compare …
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Team Science Reveals Important Protein in Poplar
… a protein , PtrbHLH011, within poplar involved in plant growth, lignin production, and disease resistance.  The Impact With increased lignin and iron, engineered … of Energy, Office of Science, Office of Biological and Environmental Research, as part of the Quantitative …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal … domain, there is a group of tiny hitchhikers. These organisms are abundant and yet exceptionally small, with mini … interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements … sample. Their work showed that single cell genomics can add significant value to the other commonly used … This work was supported in part by a Natural Sciences and Energy Research Council of Canada (NSERC) Discovery …
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Better Genome Editing for Bioenergy
… is a powerful, high-throughput gene-editing tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to … RNAs on  Yarrowia lipolytica to identify essential genes and genes that lead to increased lipid production. These …
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The Genome Portal of the Department of Energy Joint Genome Institute
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The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly … practice ideas presented in a  Trends in Biotechnology  review piece by Yoshikuni and JGI colleagues Jing Ke and … as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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