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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid … PacBio reads (i.e., reads with very low error rate), so our pipeline performs long-reads-only assemblies and not … Depending on the project setup, we can include as part of our data analysis plan mapping of short-reads datasets …
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Streamlining Regulon Identification in Bacteria
… transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … genes associated with a given transcription factor is resource-intensive and unscalable. To test the efficacy of …
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Alabama A&M Interns Access An Abundance of Knowledge
… enriching workshops and networked with fellow interns and scientists alike. Want to learn more about their experience? … A&M University this fall for my master’s in plant soil science and my career focus is plant breeding. Ti’Yanna … a JGI intern means not only just watching and observing your mentor, but also being a support for them and …
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Taking Stock of the Known and Unknown Microbial Space
… global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … representation. “When it comes to isolate genome data, our real-world touchstones, we’re just scratching the …
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Promoting the Power of Viral Metagenomics
… summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos Kyrpides , was  recently published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a … working to address some of the most pressing challenges of our time. For more information, please visit  …
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The Case for Conservation
… “older than dinosaurs” could help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant … comprise a full third of each moss genome, and are almost four times the size of the next largest chromosome. As the … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how …
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Georg Rath
… the JGI, he has been working on the boundary of life science and computational science with notable stops at … infrastructure in close collaboration with the local scientists. As the lead of the infrastructure team and the … people and transparency and a staunch supporter of open source development processes. This expresses itself in the …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor … to produce these enzymes to break down polysaccharides. But scientists have wondered exactly how the microbial community … findings in the  Proceedings of the National Academy of Sciences . The team focused on the dominant bacterial clades …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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DAS Tool for Genome Reconstruction from Metagenomes
… approach to genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , … samples. The work aligns with the ETOP mission of providing JGI users with the most current technology and expertise in … Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. …
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Refining the Process of Identifying Algae Biotechnology Candidates
… [subhed -- copy to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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