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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and compute … and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… omics methods to examine microbial chemical production. The Science Soil bacteria in the genus Streptomyces are nature's … conditions. As described in a recent issue of mSystems , scientists found that adding salt to the growth medium … of multiple omics data from various environments — that JGI users can leverage to create a more complete picture of …
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Virus Discoveries that Keep Getting Bigger
… quickly accelerated understanding of giant viruses. The Science In the last thirty years, in environments all over the world, scientists have discovered giants among viruses. Now … makeup of new giant viruses. This review highlights four of these approaches. One way of detecting giant viruses …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … system. “We then looked into many more samples and refined our methodology,” Neri said. “Our team grew and so did the …
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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The Surprising Structure of a Shrub Willow Sex Chromosome
… of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. Most species are … with sufficient resolution to analyze their structure. Scientists found both a gene likely important for sex … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism
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Rapid changes in coastal ocean microbiomes uncoupled with shifts in environmental variables
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STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … driving force behind the development of numerous genomic resources that fostered the widespread adoption of Brachypodium … his postdoctoral studies at the Carnegie Institution for Science where he studied the molecular basis of a plant …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… (SFA²F) meeting brings together established and emerging scientists from academia, industry, and government … talk and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your science. …
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and … virus sequences are being recovered and identified from environmental samples (metagenomes). However, the quality … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced …
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