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Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a … ecosystems and organisms than ever before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, … from this sample set through the Community Science Program, it was the largest project the JGI had ever put …
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Outreach Stories
… Interested in reading more JGI intern and mentor success stories? Read more below. …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… produced by living organisms. The collaboration between the JGI and the Foundry on this project highlights an  ongoing partnership that combines the JGI’s genomic capabilities with the Foundry’s nanoscale materials research. As described in the JGI’s latest strategic plan, the Biomolecular Materials …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … to culture these microbes in the lab. After joining the JGI, he formed the Microscale Applications group to operate a similar single-cell genomics pipeline that provides JGI users access to the …
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All Events
… The JGI is represented at conferences year round; find out where …
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Mapping Heat Resistance in Yeasts
… biofuel production. Efforts such as the 1000 Fungal Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility of Lawrence … sequenced at the JGI as part of a 2014 Community Science Program project. The results revealed that at each of eight …
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The widespread IS200/605 transposon family encodes diverse programmable RNA-guided endonucleases
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Danielle Goudeau
… Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines …
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A Step Toward Controlling Soybean Rust
… of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien Duplessis of the French … to counter soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in 2010.       … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … sediments,” said Woyke, who also heads the JGI’s Microbial Program and is one of the article’s senior authors. The team … the entire cell.” The JGI team then used single cell genomics to analyze five of the bacterial cells on the …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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