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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… terabytes of data with MetaHipMer2. And the National Energy Research Scientific Computing (NERSC) has another … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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How Filamentous Fungi Sense Food
… present in plant biomass. This is of interest for bioenergy researchers looking to improve the industrial … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Joint Genome Institute Community Science Program grant (CSP 982), and funds from the Fred E. Dickinson Chair of Wood …
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Ben Bowen
… and Environmental Research user community in their bioenergy and environmental objectives. … BS – University of … fellowship … Raad, M., Rond, T., Rübel, O., Keasling, J., Northen, T., & Bowen, B. (2017). OpenMSI Arrayed Analysis … metabolomics and metabolite atlases. Journal of the American Society for Mass Spectrometry, 21, 1471–1476. …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior … Brachypodium. Genetics, 223 (2), art. no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 Gradual polyploid …
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A Collaboration to Improve Plant Genome Annotations Across Species
… improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … to improve plant genome annotations at the US Department of Energy (DOE) Joint Genome Institute (JGI)*, a national user … a single lab. Growing different species poses significant challenges, as establishing standardized growth protocols …
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THE Bioenergy Tree
The US Department of Energy’s favorite tree is poplar. They’re the fastest growing trees in the Northern Hemisphere, making them tantalizing plants to harness for bioenergy. In this episode, hear from Oak Ridge National …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development … dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of … Prize for Studies in Bacterial Systematics (2012-2014) American Academy of Microbiology Fellow (2014) Academic …
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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A Grass Model to Help Improve Giant Miscanthus
… (perenniality). The Impact Among the long-term aims for bioenergy feedstock crops are increasing their yields and … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and Environmental Research under Award Number DE-SC0018420. The work conducted by the U.S. Department of Energy …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… food web, forming the base of the food chain and providing energy for a slew of marine organisms, as well as … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of Canada-Compute Canada facilities. The work (10.46936/10.25585/60001017) conducted by the U.S. Department of …
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Busting the Unbreakable Lignin
… to tackle when it comes to breaking down a plant for energy: Cellulose, hemicellulose and lignin, cumulatively … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential … Research of the U.S. Department of Energy grant DE-SC0020420 (MAO), Institute for Collaborative Biotechnologies …
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Ancient Algae Reveal Secrets of Plant Evolution
… way for innovations in sustainable agriculture and clean energy. These evolutionary strategies that helped plants … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of Nebraska Lincoln, the Research & Artistry Award of Northern Illinois University, the Joint Genome Institute …
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