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Computationally Classifying Fungal Lifestyles
… As a proof of concept, researchers developed an algorithm that “taught” a computer how to classify 101 representative … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in Mycology . This work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved …
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A Collaboration to Improve Plant Genome Annotations Across Species
… specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently published work on the JGI Plant Gene Atlas in  Nucleic Acids Research . The …
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical industry. He … joint appointments as Fungal and Algal Program Head at the JGI, a Senior Scientist at Lawrence Berkeley National … Grigoriev is the Fungal & Algal Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was supported in part by the Allen Distinguished Investigator Program, through The Paul G. Allen Frontiers Group, the …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Communications paper . The work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of … and giant viruses. While the microbes in a single drop of water could outnumber a small city’s population, the number … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Chomping Toward Better Plastic Recycling
… can digest plastic. So researchers are taking a look at how these critters process plastic, to improve plastic …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… Biology Who’s Invited? All Berkeley Lab Employees and Affiliates. When: August 29th, 3:00 pm – 5:30 pm 3:00 pm – 4:15 … Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek Featuring a casual, candid, C-level panel discussion with … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Building Wet and Dry Lab Skills
… grant.  Building off the previous year’s project, undergraduate interns Tamyra Long and Zyiah Mikes worked with mentors … on to Dori – a computer cluster owned and operated by the JGI and Berkeley Lab – to launch a jupyter notebook running … Alabama A&M majoring in Biology, and I'm also an intern at JGI with Yi and Sharon. Yi Zhai : Hi, everyone. My name is …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers focused on the full … done to gain insights into gene families involved in adaptations seen in later plant lineages. The team found that … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory, to create the database. JGI provided metagenome and metatranscriptome sequences, as …
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Trent Northen
… Dr. Northen is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using …
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