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Corymbia Genome Expands Terpene Synthesis Knowledge
… of two C. citriodora subspecies broaden understanding of the terpene synthase gene family across eucalypt … . From these samples, a total of 127 TPS loci were found, many of which had high sequence similarity to TPS … in E. grandis . Notably, the specific types of TPS genes found in C. citriodora suggest that these plants synthesize …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome … to solve the world’s evolving energy and environmental challenges.   Mission  The mission of the JGI is to provide …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base … mutually beneficial to antagonistic. In fungi, 5mC is often found in transposable elements or transposons that can move … of 5mC pathways across 528 species. The researchers found that unlike most flowering plants and animals, fungi …
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Aerobic bacterial methane synthesis
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Biology of Fungi and Their Bacterial Endosymbionts
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the … still, there are no boundaries in the ocean. Yet, what was found here is that there is this invisible partitioning of algal communities.” The team found that the boundary, or biodiversity ‘break point,’ …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to … the largest class of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes Project, including … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health … equipped to do on the leaf surface. More specifically, they found that microbial community composition and functional … forests and the atmosphere. The team learned that some bacterial families carry genes for degrading monoterpenes …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have … great science that will help solve energy and environmental challenges. Oh, the magical world of the cow stomach. Rumen … energy production.  However, less than 10% of the microbes found in any environment can be grown in a laboratory — and …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment … work on the world’s most pressing energy and environment challenges. The JGI offers these solutions to the worldwide … actually quite significant knowing that there’s one billion bacteria in a teaspoon of soil.” She added that overall, …
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Accelerating Metagenomics Discoveries with Deep Learning
… Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to … of these algorithms, inspired by communication networks found in nature, allows machines to “learn” features. State …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is … to stay localized at different depths. But SAR324 can be found throughout the water column, from the warm, well-lit … This research was supported by grants from the Simons Foundation (#329108 and #721223 to EFD) and Gordon and Betty …
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