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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … in the genome by adding tagged transcription factors to a genomic DNA library. “It’s an innovative way to rapidly … factors that you’re going to need to then probe the genomic DNA for the binding sites.” The technology expresses …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting researchers to submit … white papers to the Community Science Program’s  Functional Genomics call for proposals .  On July 8, JGI’s DNA … really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a … led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired … ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 interns, who …
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When “The Blob” Made It Hotter Under the Water
… impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … from the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The Blob, … and his colleagues collected more than 270 water samples. Genomic DNA extracted from the water samples were sequenced …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI researchers are among … beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell … nature. In the last few years, mapping the planet’s viral diversity has advanced drastically, aided by genome assembly …
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Effects of sample treatments on genome recovery via single-cell genomics
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … Area are also co-located in the IGB. Vision The vision of the U.S. Department of Energy (DOE) Joint Genome …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … process called fermentation. To better understand the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of with …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters … collaboration with the JGI Algal Program, which explores genomics of algal diversity and biology to support basic science as well as …
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The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
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