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Help from Citrus’ Bitter, Hardier Cousin
… ravaging citrus groves: citrus greening. From 2012 to 2016, in Florida alone this disease caused an estimated $4 … JGI’s Daniel Rokhsar, published over the last half-dozen years, on the ancestral origins of  Citrus sinensis , the …
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Waiting to Respire
… ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… rely on enzymes that have been evolving for billions of years. However, these enzymes are often loosely understood, … plant, fungi and animal. This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified … using bioinformatic software called FastTree and identified 62 distinct AT groups. However, no single AT group was …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … with the first traces possibly at ~3.5 Gy (billion years),” Borrel and Gribaldo said in an email. “Therefore, …
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A Community Resource for Secondary Metabolite Researchers
… expediting BGC and biosynthesis research.  Summary Over the years several secondary metabolites databases have been made …
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Tracing the Evolution of Shiitake Mushrooms
… of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree … Lentinula genus diverged roughly 28 million years ago, when the largest mammal ever, Paraceratherium, … This research was supported by the NSF awards DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of …
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Mapping Heat Resistance in Yeasts
… that a new genetic mapping strategy called RH-Seq can identify genes that promote heat resistance in the … between species that have been separated for millions of years. The study highlights the genes that could be used to …
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A Model System for Perennial Grasses
… genomes from varieties that diverged over a million years ago. The hallii variety thrives in desert … reference genomes for P. hallii , researchers can identify and characterize the regulatory elements that influence … This work was funded by NSF/IOS-1402393 (JTL), NSF/IOS-1639872 (JTL/TEJ), NSF/IOS-0922457 (TEJ), NSF/IOS-1444533 …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… that adapted to marine environments hundreds of millions of years ago.  The Impact Chloroflexota are bacteria that act … The work (proposal:  https://doi.org/10.46936/10.25585/60000691 , and  …
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Uncovering Novel Genomes from Earth’s Microbiomes
… can’t be sequenced using traditional approaches. Identifying and characterizing the planet’s microbial diversity is …
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Kjiersten Fagnan
… workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and … and Analysis, 2018, pp. 717-730, doi: 10.1109/SC.2018.00060. Wood-Charlson, E.M., Anubhav, Auberry, D. et al. The … Two-Phase Flow In Porous Media. Computational Geophysics 16(3). Dosanjh and S. Canon and J. DeSlippe and K. Fagnan and …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… and filtering water. Peat formed there over thousands of years sequesters more carbon than all other vegetation types … peatlands in the face of a warming climate. Identifying these sex chromosomes and their role in sphagnum’s … The work (proposal no. 10.46936/10.25585/60001030) (A.J.S.) conducted by the US …
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