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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… are often very different than those bred for Texas. Identifying and breeding varieties that have high productivity … differences rather than just observing them. Can we quantify them? Can we tie them to the genome? We can use common … set up these gardens, we have them to study for a number of years. And that’s a real benefit for the research program.” …
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Pinning Down a Piece of Photosynthesis
… light, transport molecules and regulate reactions. Identifying these proteins and then figuring out what they are … set out to tackle some of these genes, expressing and purifying the range of proteins these genes produced, to identify examples that would work well for  in vitro  and  in vivo …
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Mapping the Earth’s Hidden Fungal Kingdom
… and lay a future-ready foundation     Over the past billion years, fungi have spread quietly throughout our planet. From … these organisms have diversified into an estimated 2–6 million species — dwarfing the diversity of plants. To put … from diverse fungi, researchers struggle to identify and classify new species from environmental samples. …
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Improving the Cacao Genome and Phytozome
… (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The global chocolate brands couldn’t … why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is … and includes RNA-seq data. The improved  T. cacao Matina 1-6 genome is now available for comparative purposes on the …
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Len Pennacchio
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Leo Baumgart
… fungus Rhizopus microsporus." Nature Communications 16, no. 1 (2025): 3843. McCahill, Ian W., Logayn T. Abushal, … embryo and root development." Plant Communications 6, no. 10 (2025). Kruse, Colin PS, Sara Calhoun, Bishoy … DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium …
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The Power of One, Amplified
… in, on, and around the planet remain unknown. In recent years, advances in sequencing technologies and bioinformatic … diverse than those within more moderate ecosystems. A few years ago, a candidate bacterial lineage was identified from … was then used to produce a paired amplicon dataset (a.k.a. 16S rRNA gene sequencing), a shotgun metagenome, and a single …
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Waiting to Respire
… ancestral bacteria’s energy sources. More than two billion years ago, cyanobacteria acquired the ability to produce …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… rely on enzymes that have been evolving for billions of years. However, these enzymes are often loosely understood, … plant, fungi and animal. This analysis led them to identify 2,938 putative AT  genes. Within the AT genes identified … using bioinformatic software called FastTree and identified 62 distinct AT groups. However, no single AT group was …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … with the first traces possibly at ~3.5 Gy (billion years),” Borrel and Gribaldo said in an email. “Therefore, …
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A Community Resource for Secondary Metabolite Researchers
… expediting BGC and biosynthesis research.  Summary Over the years several secondary metabolites databases have been made …
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Tracing the Evolution of Shiitake Mushrooms
… of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree … Lentinula genus diverged roughly 28 million years ago, when the largest mammal ever, Paraceratherium, … This research was supported by the NSF awards DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of …
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